Supplementary Material for PEAKS paper

• The 54 acceptable Spectra for four proteins: adh_yeast.pkl, bsa_bovine.pkl, cyc_horse.pkl, myg_horse.pkl.
• The rejected spectra: adh_yeast_nontryptic.pkl, adh_yeast_poorquality.pkl, bsa_bovine_poorquality.pkl.
• The de novo sequencing results on the acceptable spectra: html format, MS Excel format.
• A limited-functionality free PEAKS software is available at Bioinformatics Solutions Inc.