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SAGE: String-overlap Assembly of GEnomes





SAGE2 is now available: SAGE2_source_code


SAGE is a new string-overlap graph-based de novo genome assembler. To run SAGE, first correct the input dataset using RACER, then use the command:

     SAGE [inputFile(s)] [outputDir] [minOverlapLength]

where

SAGE assumes all reads have the same length and the paired reads are interleaved.

The assemblies for the datasets in the paper can be found below:

SAGE source code

The source code can be downloaded here.

Citation

If you use SAGE, please cite:

Contact

For any questions, please contact Lucian Ilie: ilie@uwo.ca


© 2014 Lucian Ilie, Bahlul Haider, Michael Molnar, Roberto Solis-Oba