Very small organisms (submillimeter size) not only form the foundation of most food webs, they are among the oldest life forms on the planet. Genetically conservative, some may have survived pretty much unchanged for more than a billion years.Return to A.K. Dewdney's Home Page
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Checklist of Microbiota for Southern Ontario
As such, microorganisms anticipate development of the plant and animal kingdoms: submillimeter life forms have their own photosynthetic and heterotrophic compartments. I have spent much of my life enjoying these creatures, making local collections and watching them under my microscope. In the process, I have become familiar with more than 300 species from groups as diverse as Eubacteria, Ciliophora, and Bacillariophyta.
GETTING STARTED
In 1990, anticipating my early retirement from the Computer Science Department, I decided to "get serious" about this erstwhile hobby. Having joined the EMAN (Ecological Monitoring and Coordinating Network, an initiative of Environment Canada) as a member of the Science Cooperative, I began a monitoring project of my own, a study to log changes in the shore and midstream benthic submillimeter organisms in a small creek known as the Logan Drain, near Kintore Ontario. I loaded up on new reference manuals and monographs, then began taking monthly samples from the Logan Drain through the eight warmest months of the year. I pursued this project for two years, adding a survey of a forest stream (Bradley's Creek) in the second year for purposes of comparison.
Shown below is a species abundance histogram for the Logan Drain, a summary of occurrences on slides of each of 222 microorganisms. For each integer k, the height of the bar indicates the number of species which occurred k times on the slides. In this particular case, abundance categories have been grouped as 1-2, 3-4, etc. I was somewhat surprised by the shape of this histogram. It resembled a hyperbola!
This led, indirectly, to the next strange experience. Thinking that intense interactions that characterize so much of the microbial community must lead to quite a different shape, I wrote a computer simulation program that would imitate such interactions (mutually predatory) only to discover, after the usual process of debugging and validation, the same hyperbolic shape staring at me from the computer screen! See Biodiversity Research.
Since that time, several years ago, I have probed other local waters, some systematically, others occasionally. I have summarised my observations in the following checklist, which I have used in workshops on aquatic microbial communities.
Anacystis sp. (syn. Aphanocapsa) FP OC BC [Chroococcus sp.] OC [Gloeothece] sp. OC [Marssoniella elegans] FP OC BC TR Merismopedia [convoluta] FP M. [glauca] FP LD Microcystis aeruginosa(syn. Polycystis) FP OC M. flos-aquae FP
Chamaesiphonales
Pleurocapsaceae
[Pleurocapsa minor] OC Oscillatoriales
Oscillatoriaceae
Lyngbya birgei FP LD L. contorta FP LD Oscillatoria spp. FP LD BC O. [rubescens] FP O. [minima] (pseudo sp.) OC LD BC Phormidium sp. OC LD Spirulina sp. FP OC
Nostocales
Nostocaceae
Anabaena [subcylindrica] FP OC LD BC A. spiroides FP Anabaena sp. A (not coiled) FP Nodularia [spumigena] FP NF
unplaced
CGC (colourless/pale gliding) FP OC LD BC
EUBACTERIA (morphospecies) (not recorded for OC)
(bending) filaments FP LD BC vibrios FP LD BC coccal filaments FP LD BC motile cocci FP LD BC colonial cocci BC bacilli FP LD BC bacillary chains LD pseudomonads FP spirilla LD BC
KINGDOM PROTISTAOOMYCOTA
Saprolegniales
Saprolegnia sp. LD
BACILLARIOPHYTACentrales
Cyclotellaceae
Cyclotella spp. OC LD BC
MelosiralesMelosiraceae
Melosira [varians] OC LD BC NF
FragilarialesFragilariaceae
Diatoma vulgare OC LD BC NF Diatoma elongatum NF Fragilaria [brevistriata] FP LD BC NF F. [inflata] FP LD F. [arcus] OC Meridion circulare FP LD BC NF [Opephora] sp. FP Synedra pulchella FP S. [tabellata] OC LD BC NF
Tabellariaceae
[Tabellaria fenestrata] OC
EunotialesEunotiaceae
Eunotia pectinalis var minor FP OC BC Rhoicosphenia curvata NF
NaviculalesPinnulariaceae
Pinnularia sp. FP LD BC Pinnularia [borealis] NF
Naviculaceae
Navicula [affinis] OC LD BC N. canalis FP OC TR NF N. [bacillum] FP OC LD BC N. cuspidata FP OC BC NF N. [elegans] OC LD N. hungarica FP OC LD BC N inflexa NF N. [interrupta] FP OC LD BC NF N. [nodosa] FP LD BC N. peregrina OC LD BC TR N. [parva] LD BC N. [radiosa] FP Navicula viridis NF Stauroneis phoenicentron NF
Pleurosigmataceae
Gyrosigma [scalproides] FP OC LD BC NF Gyrosigma Kutzingii NF
CymbellalesCymbellaceae
Cymbella [tumida] FP OC LD BC NF C. [ventricosa] FP OC LD BC C. [cistula] OC Encyonema sp. BC TR Amphiprora [ornata] OC BC Caloneis amphisbaena FP OC LD BC TR NF C. [bacillum] FP
Gomphonemataceae
Gomphonema acuminatum FP OC BC G. constrictum FP OC LD BC G. [olivaceum] FP OC BC NF
AcnanthalesCocconeidaceae
Cocconeis sp. FP OC LD BC TR
AmphoralesAmphoraceae
Amphora sp. A (short) FP LD BC NF Amphora sp. B (long) FP LD A. [ovalis] OC LD
BacillarialesNitzschiaceae
Nitzschia acicularis FP OC LD BC NF N [filiformis] LD BC NF N. sigmoidea FP OC NF N. [paradoxa] OC LD BC Hantzschia amphioxys NF
EpithemialesEpithemaceae
Rhopalodia gibba FP
SurirellalesSurirellaceae
Campylodiscus sp. OC LD BC Cymatopleura elliptica OC LD C. solea OC LD BC NF Surirella splendida OC LD BC TR S. [ovalis] LD S. [ovata] LD S. [elegans] LD
XANTHOPHYTAXanthophyceae
Tribonematales
Tribonemataceae
[Tribonema] sp. LD BC
VaucherialesVaucheriaceae
Vaucheria sp. FP
OchromonadalesOchromonadaceae
[Ochromonas] sp. LD [Monas] sp. LD [Uroglena volvox] OC
Dinobryaceae
Dinobryon sp. OC BC NF
Synuraceae
Synura uvella FP BC NF
Chrysococcaceae
[Chrysococcus] sp. LD
CRYPTOPHYTACryptomonadaceae
Chilomonas [paramecium] FP LD BC
unplaced
Goniomonas sp FP LD BC
CHLOROPHYTAChlamydomonadales
Chlamydomonadaceae
[Chlamydomonas] sp. FP LD Haematococcus lacustris NF [Polytoma] sp. LD
VolvocalesVolvocaceae
Gonium sp. FP
TetrasporalesGloeocystaceae
[Gloeocystis] sp. FP OC LD BC
ChlorococcalesCoccomyxaceae
Ourococcus sp. FP
Chlorococcaceae
Bracteacoccus sp. NF Chlorococcum aquaticum NF [Chlorococcum] sp. LD
Characiaceae
[Characium] sp. FP LD NF
Hydrodictyaceae
Pediastrum biradiatum FP OC TR P. boryanum FP OC BC TR P. [obtusum] FP P. simplex OC
Palmodictyaceae
Palmodictyon varium FP NF
Oocystaceae
Ankistrodesmus [braunii] FP OC A. falcatus FP [Chlorella] sp. LD Tetraedron limnecticus FP TR T. regulare FP Selenastrum [gracile] FP OC LD BC Kirchneriella lunaris FP Oocystis [borgei] FP
Scenedesmaceae
[Lauterborniella] sp. FP Scenedesmus bijuga FP S. incrassatulus FP OC S. quadricauda FP OC LD BC TR NF
Dictyosphaeriaceae
Dimorphococcus lunatus FP
OedogonialesOedogoniaceae
Bulbochaete sp. FP NF [Oedogonium] sp. FP NF
ChaetophoralesChaetophoraceae
[Desmococcus viridis] OC Stigeoclonium sp. FP
UlvophyceaeUlotrichales
Ulotrichaceae
[Geminella] sp. OC Ulothrix spp. FP LD NF
SiphonocladalesCladophoraceae
Cladophora/Rhizoclonium sp. FP OC LD BC TR NF
CharophyceaeCharales
Characeae
Chara sp. FP
CONJUGOPHYTA (syn. Gamophyta)Zygnematales (no classes)
Zygnemataceae
[Debarya] sp. FP [Entransia] sp. FP Mougeotia spp. FP OC NF Spirogyra ssp. FP OC LD BC NF S. "gigantissima" FP Zygnema sp FP Zygnemopsis sp. NF
DesmidialesClosteriaceae
[Arthrodesmus] sp. FP Closterium [leibleinii] FP LD BC TR NF C. kuetzingii FP OC C. [loefgrenii] FP TR C. [parvulum] LD C. lunula NF Cosmarium margaritatum FP OC LD Cosmarium sp. A (no ornam.) FP LD TR NF Euastrum sp. FP OC Micrasterias [americanum] FP Spinocosmarium sp. OC Spondylosium sp. FP Staurastrum spp. FP LD S. [leptocladum] FP BC S. [rotula] OC
DINOFLAGELLATAPeridiniales (no classes)
Peridiniaceae
Glenodinium monensis FP Glenodinium cinctum NF
ZOOMASTIGINAKinetoplastida
Bodonida
Bodonidae
Bodo sp. LD BC
EUGLENOPHYTAEutreptiales (no families)
Distigma [proteus] LD [Distigmopsis] sp. OC
Euglenales
Euglena acus FP E. cyclopicola LD E. deses LD BC NF E. spirogyra FP LD E. pisciformes NF E. proxima FP E. [Ehrenbergii] OC E. rostifera NF Astasia sp. FP LD BC NF Lepocinclis [acuta] FP L. glabra FP Cyclidiopsis acus FP Trachelomonas sp. FP OC LD BC NF Phacus sp.A (subrectangular) OC Phacus sp.B (short tail) FP P. longicauda FP P. triqueter FP OC LD P. trimarginatus FP P. curvicauda NF Hyalophacus ocellus FP
Rhabdomonadales
[Rhabdospira spiralis] OC BC Menoidium bibacillatum FP LD
Sphenomonadales
[Atraktomonas] sp* FP OC BC Petalomonas bicarinata FP P. tricarinata FP BC P. alata FP Petalomonas sp. (poss. above) LD BC Notosolenus sp. FP OC LD BC Anisonema sp. FP OC LD BC NF
Heteronematales
Urcoelus sabulosus FP LD BC Urceolus cyclostomus NF U. [cyclostomus] LD Peranema [trichophorum] FP LD BC NF Heteronema [acus] FP OC LD BC H. spirale FP Entosiphon sulcatus BC * This organism is quite rare, so ID is highly uncertain
CRYPTOPHYTA
Cryptophyceae (no orders or families!)
Chilomonas paramecium FP BC NF
KARYOBLASTEA (essentially one species in the phylum!)
Pelomyxa palustris FP
RHIZOPODALobosea
Gymnamoebia (sC)
Amoebida
Amoebidae
Amoeba proteus FP OC LD Trichamoeba sp. FP OC BC
Hartmannellidae
Hartmanella [vermiformis] OC LD BC TR
Thecamoebidae
Thecamoeba striata FP OC LD BC NF Vanella [simplex] LD BC
Striamoebidae
Striamoeba striatus NF
Paramoebidae
Mayorella sp. FP OF LD BC NF M. penardi FP LD M. bigemma LD Saccamoeba sp. NF
Testacealobosa (sC)Arcellinidae
Arcellidae
Arcella vulgaris FP OC LD BC TR [Hyalosphaenia] sp. OC BC
Centropyxidae
Centropyxis sp. FP
Difflugiidae
Difflugia corona FP LD TR D. globulosa FP OC LD BC NF D. oblonga FP OC LD BC TR NF D. urceolata OC
Cyclopixidae
Cyclopyxis arcelloides FP OC LD
FiloseaAconchulinida
Filamoeba nolandi FP OC [Dactylamoeba stella] FP
TestaceafilosidaEuglyphidae
Euglypha alveolata FP OC BC Cyphoderia [ampulla] OC LD BC
ACRASEAAcrasidae (no classes or orders)
[Acrasis] sp. FP
ACTINOPODAHeliozoa
Cryptaxohelida
Actinophryidae
Actinophrys [sol] FP LD SC BC TR NF [Actinosphaerum] sp. OC Echinosphaerium [eichhornii] FP TR
Ciliophryidae
Multicilia [lacustris] LD BC
PhaneraxohelidaAcanthocystidae
Acanthocystis sp. OC LD BC BC TR
unplaced
[Myriophrys] sp FP OC LD
CILIOPHORA (61) [Jahn et al.]Suctorea
Exogenida (order)
Podophryidae
Metacineta mystacina LD
HypostomeaSynhymenida
[Nassulopsis] sp. LD
Nassulida
Nassula aurea OC LD NF
CyrtophoridaChilodonellidae
Chilodonella spp. FP LD BC NF
Gymnostomea/PleurostomatidaAmphileptidae
[Litonotus] sp. (small) FP BC L. [fasciola] FP OC LD BC TR NF
Trachelocercidae
Trachelocerca sp NF
Karyorelictida
Loxodes [vorax] LD BC
HaptoridaEnchelyidae
Lacrymaria olor OC Lacrymaria sp. (not L. olor) FP
Tracheliidae
Dileptus anser FP LD BC NF Dileptus sp. (not anser) TR
Actinobolinidae
Actinobolina [vorax] FP LD
Didiniidae
[Askenasia] sp. LD Didinium sp. LD
ProrodontidaProrodontidae
Prorodon sp FP LD
Colepidae
Coleps hirtus FP OC BC NF
unplaced
[Microregma] sp. LD
VestibuliferaColpodida
Colpodidae
Colpoda cucullus FP BC Colpoda [steini] TR
HymenostomeaHymenostomatida
Tetrahymenidae
Tetrahymena [pyriformis] LD T. [gyrans] BC Glaucoma scintillans NF
Parameciidae
Paramecium aurelia-gp. LD BC P. [bursaria] OC LD P. caudatum-gp. FP TR
Frontoniidae
Frontonia [acuminata] FP F. [altra] LD F. leucas FP OC LD BC TR NF
Urocentridae
Urocentrum turbo FP LD BC TR
Lembadionidae
Lembadion [bullinum] FP LD BC NF
Cohnilembidae
Cohnilembus sp. OC BC
Pleuronematidae
Pleuronema sp. OC LD BC
Cyclidiidae
Cyclidium [glaucoma] FP OC LD BC TR NF
unplaced
Stokesia sp. LD
PeritricheaSessilida
Vaginicolidae
Vaginicola [ingenita] FP BC
Vorticellidae
Vorticella [campanula] FP OC TR NF V. [convallaria] LD BC NF
Epistylidae
Epistylis chrysemidis FP Zoothamnium sp. FP
unplaced
Ophrydium sp. OC
HypotricheaStichotrichida
Holostichidae
[Uroleptus] sp. LD BC NF
SporadotrichidaOxytrichidae
Oxytricha [fallax] FP OC LD BC TR NF Oxytricha saltigera NF Stylonychia [mytilus] FP OC NF S. [pustulata] LD BC Urosoma sp. A (no caudal filam.) FP Urosoma sp. B (with) OC LD BC
Aspidiscidae
Aspidisca [lynceus] FP OC LD BC NF A. costata FP OC LD BC TR Aspidisca sp. A FP
Euplotidae
Euplotes [patella] FP OC LD BC NF
unplaced
[Chaetospira] sp. LD
SpirotricheaHeterotrichida
Spirostomidae
Spirostomum ambiguum FP OC LD BC S. [minus] FP Blepharisma [americanum] FP LD BC Blepharisma steni NF
Metopidae
Metopus [es] FP OC LD
Stentoridae
Stentor coeruleus FP OC BC Stentor sp. A (rosy, flared perist.) FP BC S. [igneus] (no nuclear chain) FP OC LD TR NF
Bursariidae
Bursaria truncatella FP
Caenomorphidae
Caenomorpha [sapropelica] FP OC BC
OdontostomatidaEpalxellidae
Saprodinium [putrinum] FP
unplaced
Brachonella spiralis FP
OligotricheaOligotrichida
Strombidiidae
Strobilidium gyrans FP LD BC TR NF
KINGDOM ANIMALIACNIDARIA
Hydrozoa
Hydra viridis TR
PLATYHELMINTHESTurbellaria
Catenulida
Catenulidae
Catenula sp. FP
Stenostomidae
Stenostomum sp. OC LD BC
MacrostomidaMacrostomidae
Macrostomum sp. FP BC
TricladidaPlanariidae
[Planaria] sp. OC
DalyelloiidaDalyelliidae
[Microdalyellia] sp. LD
GASTROTRICHAChaetonotida (no classes)
Chaetonotidae
Polymerurus sp. FP OC Chaetonotus spp. FP OC LD BC NF
Dasydytidae
Dasydytes sp. FP OC LD BC TR
ROTIFERADigononta
Bdelloidea
Philodinidae
Dissotrocha sp. NF [Philodena/Rotaria] sp. FP OC LD BC TR NF
PloimaBranchionidae
Platyas patulus FP P. quadricornis FP Brachionus quadridentata NF
Colurellidae
Colurella sp. FP NF Lepadella sp. FP LD BC TR NF
Dicranophoridae
Dicranophorus sp. OC LD BC TR
Euchlanidae
Euchlanis sp. FP LD [Beauchampiella] sp. FP
Lecanidae
Lecane (syn. Monostyla) sp. FP OC LD BC TR NF
Mytilinidae
Mytilina sp. FP
Notomatidae
Cephalodella sp. FP LD BC NF
Synchaetidae
Synchaeta [stylata] FP
Trichocercidae
Trichocera sp. FP OC LD BC TR NF
Trichotriidae
Trichotria tetractis FP BC
NEMATODA
nematode spp. FP OC LD BC TR
ANNELIDAOligochaeta (few-bristled worms) (no orders)
Naididae
Dero furcatus FP Chaetogaster sp. FP OC LD
TARDIGRADA (water bears)Eutardigrada
Parachela
Macrobiotidae
Macrobiotus sp. FP
ARTHROPODAMalacostraca/Crustacea
Branchiopoda (water fleas/shrimp) (also in OC)
[Chydorus bicornatus] FP [Alonella] sp. FP [Macrothrix] sp. FP
Ostracoda (ostracods)
Ostracod spp. FP OC BC TR
Copepoda (copepods)Cyclopodea (sO)
Eucyclops sp. FP other sp. OC LD BC
Harpacticoida (sO)
Atthyella sp. FP other sp. LD
Amphipoda
[Hyatella sp.] LD other spp. FP OC
Insecta
Diptera
Chironomidae
Chironomus sp. OC LD BC TR
KINGDOM FUNGIEumycota (See also Oomycota)
Dothidiales
Alternaria sp. LD BC
unplaced - teleomorphs unknown
Clavatospora sp. BC Alatospora sp. BC Lemonniera sp. BC Tetrachaetum sp. BC
Bibliography Used For IdentificationBick, Hartmut. 1972. Ciliated Protozoa. World Health Organization, Geneva.
Chengalath, R. et al. 1971. Planktonic Rotifers of Ontario, University of Waerloo Biology Series. N0. 2. Waterloo, Ontario.
Curds, Colin R. 1975. A Guide to the Species of the Genus Euplotes (Hypotrichida, Ciliatea). Bulletin of the British Museum (Natural History). Zoology, Vol. 28 No. 1. London.
Donner, Josef. 1966. Rotifers.(transl. H. G. S. Wright) Frederick Warne & Co. London.
Faure-Fremiet, E. 1921. Contribution a la Conaissance des Infusoires Planktonique. Supplements au Bulletin Biologique de France et de Belgique. Paris.
Jahn, Theodore L. et al..1979. How to Know the Protozoa [2nd ed] Wm. C. Brown Co,. Dubuque, IA.
Kendrick, Bryce, 1992. The Fifth Kingdom [2nd ed]. Focus Texts, Newburyport, MA.
Leedale, Gordon F. 1967. Euglenoid Flagellates. Prentice-Hall, Englewood Cliffs, NJ.
Mackie, G. L. 1988. Common Benthic Invertebrates, Zooplankton, Algae, and Macrophytes of the Speed River Watershed. Dept. of Zoology, University of Guelph. Guelph, Ontario.
Margulis, Lynn, Corliss, John O., Melkonian, Michael, Chapman, David J. [eds] 1990. Handbook of Protoctista . Jones & Bartlett, Boston.
Margulis, Lynn & Schwartz, Karlene V. 1982. Five Kingdoms: An Illustrated Guide to the Phyla of Life on Earth [2nd ed.] W. H. Freeman & Co., New York.
Needham, James G. & Needham, Paul R. 1963. A Guide to the Study of Fresh-water Biology. (Fifth ED.) Holde-Day, Inc. San Francisco.
Nuttall, P. N. & Fernasndo, C. H. 1971. Fresh Water Ostracoda of Ontario. University of Waterloo Biology Series. No. 1. Waterloo, Ontario.
Page, F. C. 1988. A New Key to Freshwater and Soil Gymnamoebae. Freshwater Biological Association, Ambleside, Cumbria.
Prescott, G. W. 1970. How to Know the Freshwater Algae [3rd ed.] Wm C. Brown Co., Dubuque, IA.
Prescott, G. W. 1962. Algae of the Great Lakes Area.William C. Brown Co., Dbuque, IA.
Thorpe, James H. & Kovich, Alan P. 1991. Ecology and Classification of North American Freshwater Invertebrates. Academic Press, San Diego, CA.
Smith, Kristin & Fernando, C. H. 1978. A Guide to the Freshwater Calanoid and Cyclopoid Copepod Crustacea of Ontario, Univrsity of Waterloo Biology Series. No. 18, Waterloo, Ontario.
Weber, Cornelius I. 1971. A Guide to the Common Diatoms at Water Pollution Surveillance System Stations. U. S. Environmental Protection Agency, National Environmental Research Center. Cincinnati, OH.
Wolle, Francis. 1894. Diatomaceae of North America. The Comenius Press, Bethlehem, PA.
publications by author
April 1996. Micro-ecology in a Small Stream. Environmental Science Program, U. of Western Ontario, London, Canada.
(To appear) The Structure and Distribution of Benthic Microbial Communities in the Old Ausable River Channel. (in) Response of an Aquatic Ecosystem to Human Perturbation: Hydroecology and Geochemistry of the Old Ausable Rive Channel. (M. A. Maun, ed.) National Research Council, NRC Books. Ottawa, Ontario.